scGen predicts single-cell perturbation responses | Nature Methods

scGen predicts cellular responses to phenomena absent from the training data. Such out-of-sample predictions are shown across cell types and species.

Data availability All of the data sets analyzed in this manuscript are public and published in other papers. We have referenced them in the manuscript and they are downloadable at https://github.com/theislab/scgen-reproducibility. Code availability The software is available at https://github.com/theislab/scgen. The code to reproduce the results of the papers is also available at https://github.com/theislab/scgen-reproducibility. References Stubbington, M. J. T., Rozenblatt-Rosen, O., Regev, A. & Teichmann, S. A. Single-cell transcriptomics to explore the immune system in health and…

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