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“Moving Pictures” tutorial — QIIME 2 2023.5.1 documentation

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In this tutorial you’ll use QIIME 2 to perform an analysis of human microbiome samples from two individuals at four body sites at five timepoints, the first of which immediately followed antibiotic usage. A study based on these samples was originally published in Caporaso et al. (2011). The data used in this tutorial were sequenced on an Illumina HiSeq using the Earth Microbiome Project hypervariable region 4 (V4) 16S rRNA sequencing protocol. QIIME 1 Users These are the same data that are used in the QIIME 1 Illumina Overview Tutorial. Before beginning this tutorial, create a new directory and change to that directory. Before starting the analysis, explore the sample metadata to familiarize yourself with the samples used in this study. The sample metadata is available as a Google Sheet. You can download this file as tab-separated text by selecting File > Download as > Tab-separated values. Alternatively, the following command will download the sample metadata as tab-separated text and

“Moving Pictures” tutorial — QIIME 2 2023.5.1 documentation “Moving Pictures” tutorial ¶ Note This guide assumes you have installed QIIME 2 using one of the procedures in the install documents . Note This guide uses QIIME 2-specific terminology, please see the glossary for more details. In this tutorial you’ll use QIIME 2 to perform an analysis of human microbiome samples from two individuals at four body sites at five timepoints, the first of which immediately followed antibiotic usage. A study based on these samples was originally published in Caporaso et al. (2011) . The data used in

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