rnaseq » nf-core

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq: Parameters nf-core/ rnaseq RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. rna rna-seq These pages are for an old version of the pipeline ( 3.8.1 ). The latest stable release is 3.26.0 . Launch version 3.8.1 https://github.com/nf-core/rnaseq Introduction Usage Parameters Output Results Releases 3.8.1 3.26.0 3.25.0 3.24.0 3.23.0 3.22.2 3.22.1 3.22.0 3.21.0 3.20.0 3.19.0 3.18.0 3.17.0 3.16.1 3.16.0 3.15.1 3.15.0 3.14.0 3.13.2 3.13.1 3.13.0 3.12.0 3.11.2 3.11.1 3.11.0 3.10.1 3.10 3.9 3.8.1 3.8 3.7 3.6 3.5 3.4 3.3

saved by

• Hannah Le

related reading

• GitHub - nf-core/rnaseq: RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. · GitHubgithub.com
• GitHub - BioDepot/RNA-seq-lambda: Rapid RNA-seq pipeline using AWS lambda functions for alignment · GitHubgithub.com
• Using prototyping to choose a bioinformatics workflow management system | PLOS Computational Biologyjournals.plos.org
• Signature-scoring methods developed for bulk samples are not adequate for cancer single-cell RNA sequencing data | eLifeelifesciences.org
• Transcriptome assemblynbisweden.github.io
• How I sequenced my genome at home - home-seqiwantosequencemygenomeathome.com
• Current best practices in single‐cell RNA‐seq analysis: a tutorial | Molecular Systems Biology | Springer Nature Linkembopress.org
• GitHub - Illumina/SpliceAI: A deep learning-based tool to identify splice variants · GitHubgithub.com
• Elicit: AI for scientific researchelicit.com
• Studying bacterial transcriptomes using RNA-seq - PMCncbi.nlm.nih.gov
• 10. Feature selection — Single-cell best practicessc-best-practices.org
• AlphaProteo generates novel proteins for biology and health research — Google DeepMinddeepmind.google