flâneur

nf-core/rnaseq: RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

github.com · 951 words · saved by 1 readers

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Introduction nf-core/rnaseq is a bioinformatics pipeline that can be used to analyse RNA sequencing data obtained from organisms with a reference genome and annotation. It takes a samplesheet with FASTQ files or pre-aligned BAM files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix and extensive QC report. In case the image above is not loading, please have a look at the static version. Merge re-sequenced FastQ files (cat) Auto-infer strandedness by subsampling and pseudoalignment (fq, Salmon) Read QC (FastQC) UMI…

saved by

related reading