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hetio/medline: Computing term cooccurrence in MEDLINE

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Computing term cooccurrence in MEDLINE

Computing term cooccurrence in MEDLINE This repository quantifies term cooccurrence in MEDLINE. It's designed for computing the cooccurence of all pairs between two MeSH termsets. The repository computes MEDLINE cooccurences for the Rephetio hetnet. See the corresponding Thinklab discussion for more information. Modules eutility.py defines an esearch_query function for retreiving PubMed IDs matching a user-defined query. cooccurrence.py computes the cooccurences bewteen two termsets, whose associated PubMed IDs have been retrieved. Notebooks The following notebooks were used to compute relatio

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