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clulab/reach: Reach Biomedical Information Extraction

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Reach Biomedical Information Extraction. Contribute to clulab/reach development by creating an account on GitHub.

Reach What is it? Reach stands for Re ading and A ssembling C ontextual and H olistic Mechanisms from Text. In plain English, Reach is an information extraction system for the biomedical domain, which aims to read scientific literature and extract cancer signaling pathways. Reach implements a fairly complete extraction pipeline, including: recognition of biochemical entities (proteins, chemicals, etc.), grounding them to known knowledge bases such as Uniprot, extraction of BioPAX-like interactions, e.g., phosphorylation, complex assembly, positive/negative regulations, and coreference resoluti

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