✳flâneur — a map of the web's best reading

PyJAMAS (Python)

quantmorph.ca · 266 words · saved by 1 readers

Recoil velocity - Rodrigo Fernandez-Gonzalez - analyze laser ablation experiments (includes recoil velocity analysis and Kelvin-Voigt modelling) Time difference - Rodrigo Fernandez-Gonzalez - calculates the difference in pixel values across slices (i.e. a gradient along the third dimension of an image stack). Tricellular Junction Automated Detection #1 - Ray Hawkins - initial placement of fiducials identifying tricellular junctions Tricellular Junction Automated Detection #2 - Ray Hawkins - interactive editing of tricellular junction identification throughout a time series Wire connect - Rodrigo Fernandez-Gonzalez - connects two points using Dijkstra's minimal cost path algorithm. Can be applied iteratively over multiple image slices.

PyJAMAS (Python) Search this site Embedded Files Skip to main content Skip to navigation Quantitative Morphogenesis Laboratory University of Toronto PyJAMAS links documentation (contains installation instructions) source wheels PyJAMAS plugins Batch compute weight maps - Ray Hawkins - create neural network weight maps for entire datasets. Export text annotations - Rodrigo Fernandez-Gonzalez - exports PyJAMAS annotations to a text file. FCS - Rodrigo Fernandez-Gonzalez - fluorescence correlation spectroscopy analysis. Nd22tif - Rodrigo Fernandez-Gonzalez - projects and concatenates nd2 images a

Explore this link on the map →

related reading